STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1397ABC transporter, membrane spanning protein (amino acid). (217 aa)    
Predicted Functional Partners:
Atu1398
ABC transporter, membrane spanning protein (amino acid).
 
  
 
0.981
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
   0.964
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.957
Atu1399
ABC transporter, substrate binding protein (amino acid).
   0.917
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
   0.845
Atu4690
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.844
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.835
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
   0.831
Atu3360
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.830
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.828
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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