STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serAPhosphoglycerate dehydrogenase. (328 aa)    
Predicted Functional Partners:
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
 0.818
Atu1399
ABC transporter, substrate binding protein (amino acid).
       0.584
Atu1401
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
       0.563
Atu1402
ABC transporter, membrane spanning protein.
       0.552
Atu1403
ABC transporter, membrane spanning protein.
       0.552
Atu1407
Gluconate dehydrogenase.
 
 
   0.532
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.486
Atu1406
Isomerase/lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.469
Atu1397
ABC transporter, membrane spanning protein (amino acid).
  
    0.451
Atu1398
ABC transporter, membrane spanning protein (amino acid).
  
    0.451
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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