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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1405Transcriptional regulator, GntR family. (251 aa)    
Predicted Functional Partners:
Atu3532
Transcriptional regulator, GntR family.
  
     0.663
Atu3963
Transcriptional regulator, GntR family.
  
     0.663
Atu3815
Transcriptional regulator, GntR family.
  
     0.635
Atu2504
Transcriptional regulator, GntR family.
  
     0.624
Atu1406
Isomerase/lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
    0.612
Atu1407
Gluconate dehydrogenase.
 
     0.596
Atu4118
Transcriptional regulator, GntR family.
  
     0.584
Atu1387
Transcriptional regulator, GntR family.
  
     0.573
Atu4232
Transcriptional regulator, GntR family.
  
     0.551
Atu3294
Transcriptional regulator, GntR family.
  
     0.540
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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