Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1405Transcriptional regulator, GntR family. (251 aa)    
Predicted Functional Partners:
Atu3532
Transcriptional regulator, GntR family.
  
     0.663
Atu3963
Transcriptional regulator, GntR family.
  
     0.663
Atu3815
Transcriptional regulator, GntR family.
  
     0.635
Atu2504
Transcriptional regulator, GntR family.
  
     0.624
Atu1406
Isomerase/lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.616
Atu1407
Gluconate dehydrogenase.
 
     0.595
Atu4118
Transcriptional regulator, GntR family.
  
     0.584
Atu1387
Transcriptional regulator, GntR family.
  
     0.573
Atu4232
Transcriptional regulator, GntR family.
  
     0.551
Atu3294
Transcriptional regulator, GntR family.
  
     0.540
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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