STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1410ABC transporter, nucleotide binding/ATPase protein. (240 aa)    
Predicted Functional Partners:
Atu1411
ABC transporter, nucleotide binding/ATPase protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.994
livM
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
Atu4127
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
Atu2426
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
 0.983
Atu1412
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.961
Atu1125
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.905
Atu4126
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.902
Atu1413
ABC transporter, substrate binding protein (branched chain amino acid).
 
  
 0.874
braC
ABC transporter, substrate binding protein (branched chain amino acid).
 
  
 0.840
livH
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.838
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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