STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu14153-hydroxyacyl-CoA dehydrogenase type II; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)    
Predicted Functional Partners:
Atu1416
long-chain-fatty-acid-CoA-ligase.
 
 
 0.902
fad
enoyl-CoA hydratase.
  
 0.878
acd-3
acyl-CoA dehydrogenase.
 
 0.839
fadB-2
enoyl-CoA hydratase.
  
 0.633
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
  
   0.616
Atu3505
enoyl-CoA hydratase.
  
  0.614
Atu1421
Conserved hypothetical protein.
  
  
 0.595
gcvT-2
Glycine cleavage system T protein, aminomethyltransferase; Belongs to the GcvT family.
  
 
 
 0.557
fadB
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  0.553
Atu0733
enoyl-CoA hydratase/isomerase.
   
  0.553
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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