Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1416long-chain-fatty-acid-CoA-ligase. (611 aa)    
Predicted Functional Partners:
fad
enoyl-CoA hydratase.
 
 
 0.935
acd-3
acyl-CoA dehydrogenase.
  
 
 0.908
Atu1415
3-hydroxyacyl-CoA dehydrogenase type II; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.902
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
  
 0.899
Atu1421
Conserved hypothetical protein.
 
   
 0.873
Atu1422
Transcriptional regulator, MarR family.
  
   
 0.869
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
  
 
 0.868
gcvT-2
Glycine cleavage system T protein, aminomethyltransferase; Belongs to the GcvT family.
  
   
 0.739
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
 
 0.688
Atu2354
Transcriptional regulator, MarR family.
  
     0.664
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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