STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1438Transcriptional regulator, AraC family. (244 aa)    
Predicted Functional Partners:
Atu0865
Transcriptional regulator, AraC family.
  
     0.687
Atu4644
Transcriptional regulator, AraC family.
  
     0.659
Atu3152
Transcriptional regulator, AraC family.
  
     0.624
glxA
Transcriptional regulator, AraC family.
  
   0.619
agpT
Transcriptional regulator, AraC family.
  
     0.614
Atu3227
Transcriptional regulator, AraC family.
  
     0.595
pobR
Transcriptional regulator, AraC family.
  
   0.573
Atu0239
Transcriptional regulator, AraC family.
  
     0.542
Atu1439
Hypothetical protein.
       0.496
Atu1440
Conserved hypothetical protein.
 
     0.475
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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