STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtRTranscriptional regulator. (258 aa)    
Predicted Functional Partners:
Atu1486
Conserved hypothetical protein.
 
     0.928
prtI
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.907
Atu1483
Cytochrome b561.
       0.783
Atu2029
Conserved hypothetical protein.
 
     0.700
Atu1487
Conserved hypothetical protein; Belongs to the UPF0312 family.
       0.542
Atu2030
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.540
Atu4162
Two component response regulator.
  
 
 0.480
Atu4160
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.442
Atu2432
Hypothetical protein.
  
     0.422
Atu0474
Putative RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.419
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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