Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacPenicillin binding protein; Belongs to the peptidase S11 family. (390 aa)    
Predicted Functional Partners:
Atu0931
Penicillin binding protein.
   
 
 0.947
pbpB
Penicillin-binding protein.
 
 
 0.937
pbpB1
Penicillin binding protein 2.
 
 
 0.934
Atu2321
D-alanyl-D-alanine carboxypeptidase (penicillin binding protein); Belongs to the peptidase S11 family.
  
  
 
0.926
mrcA
Penicillin-binding protein 1a.
     
 0.909
mtgA
Monofunctional biosynthesis peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
   
 
 0.909
pbpC
Penicillin-binding protein.
   
 
 0.906
pbpC-2
Penicillin binding protein.
     
 0.901
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.806
mltB-3
Lytic murein transglycosylase.
 
   
 0.570
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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