STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixINitrogen fixation protein FixI. (763 aa)    
Predicted Functional Partners:
fixS
Nitrogen fixation protein FixS.
 
  
 0.940
fixG
Nitrogen fixation protein FixG.
 
  
 0.939
fixH
Nitrogen fixation protein FixH.
 
  
 0.893
fixO
Cytochrome C oxidase, FixO chain.
 
   
 0.760
fixP
Cytochrome-c oxidase, FixP chain; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.753
fixN
Cytochrome-c oxidase, FixN chain; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.736
Atu0843
P type cation (metal) transporter, ATPase component.
 
 
0.714
Atu0937
Copper transporting ATPase.
 
 
0.707
Atu1203
Hypothetical protein.
  
 
 0.650
Atu1531
Conserved hypothetical protein.
       0.569
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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