Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
fixGNitrogen fixation protein FixG. (527 aa)    
Predicted Functional Partners:
fixH
Nitrogen fixation protein FixH.
 
  
 0.995
fixO
Cytochrome C oxidase, FixO chain.
 
  
 0.993
fixP
Cytochrome-c oxidase, FixP chain; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.988
fixQ
Cytochrome c oxidase, FixQ chain.
 
  
 0.978
fixS
Nitrogen fixation protein FixS.
 
  
 0.971
fixI
Nitrogen fixation protein FixI.
 
  
 0.964
fixN
Cytochrome-c oxidase, FixN chain; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.963
hemN-2
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.927
Atu3191
Outer membrane protein.
 
  
 0.731
napB
Periplasmic nitrate reductase small subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
  
  
 0.729
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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