STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhAGlutathione-independent formaldehyde dehydrogenase. (398 aa)    
Predicted Functional Partners:
soxA-2
Sarcosine oxidase alpha subunit.
 
 
 0.935
soxD-2
Sarcosine oxidase delta subunit.
 
 
  0.919
nuoE-2
NADH ubiquinone oxidoreductase chain E.
    
 0.912
fdsD
NAD-dependent formate dehydrogenase delta subunit.
    
 0.912
adhC
Alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
0.911
Atu1476
Esterase D; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.910
fdhF-2
Formate dehydrogenase alpha subunit.
    
  0.903
soxB-2
Sarcosine oxidase beta subunit.
   
 
  0.902
fdhF
Formate dehydrogenase H alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.901
nuoF-2
NADH ubiquinone oxidoreductase chain F.
    
  0.900
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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