Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhAGlutathione-independent formaldehyde dehydrogenase. (398 aa)    
Predicted Functional Partners:
soxA-2
Sarcosine oxidase alpha subunit.
 
 
 0.935
soxD-2
Sarcosine oxidase delta subunit.
 
 
  0.920
Atu4221
Conserved hypothetical protein.
  
 
  0.917
adhC
Alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
0.912
Atu1476
Esterase D; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.911
nuoE-2
NADH ubiquinone oxidoreductase chain E.
    
 0.909
fdsD
NAD-dependent formate dehydrogenase delta subunit.
    
 0.909
fdhF-2
Formate dehydrogenase alpha subunit.
    
 0.904
soxB-2
Sarcosine oxidase beta subunit.
   
 
  0.902
nuoF-2
NADH ubiquinone oxidoreductase chain F.
    
  0.900
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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