Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1578ABC transporter, membrane spanning protein (amino acid). (398 aa)    
Predicted Functional Partners:
Atu1580
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.997
Atu1579
ABC transporter, membrane spanning protein (amino acid).
 
 
0.996
Atu1577
ABC transporter, substrate binding protein (amino acid).
 
 
 0.987
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
0.804
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
  
 0.790
Atu3359
ABC transporter, membrane spanning protein (amino acid).
 
 
0.781
Atu4680
ABC transporter, membrane spanning protein (amino acid).
 
 
0.748
Atu3417
ABC transporter, nucleotide binding/ATPase protein.
 
 
0.683
Atu4689
ABC transporter, membrane spanning protein (amino acid).
 
0.637
Atu4235
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
  
 0.621
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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