Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1580ABC transporter, nucleotide binding/ATPase protein (amino acid). (257 aa)    
Predicted Functional Partners:
Atu1578
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.997
Atu1579
ABC transporter, membrane spanning protein (amino acid).
 
 0.997
Atu1577
ABC transporter, substrate binding protein (amino acid).
 
 0.987
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.832
Atu4234
ABC transporter, membrane spanning protein (amino acid).
   0.827
Atu3359
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.819
Atu4281
ABC transporter, membrane spanning protein (amino acid).
 
   0.812
Atu1397
ABC transporter, membrane spanning protein (amino acid).
 
   0.801
Atu3358
ABC transporter, membrane spanning protein (amino acid).
 
   0.801
Atu4537
ABC transporter, membrane spanning protein (amino acid).
 
   0.799
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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