Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Atu1645ABC transporter, substrate binding protein. (456 aa)    
Predicted Functional Partners:
Atu1646
ABC transporter, nucleotide binding/ATPase protein.
 0.999
Atu1647
ABC transporter, membrane spanning protein.
 
 0.999
Atu1644
Conserved hypothetical protein.
 
   0.989
Atu0515
Conserved hypothetical protein.
 
 
 0.874
Atu4693
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.705
mobC
Mobilization protein C.
  
 
 0.704
Atu2052
Conserved hypothetical protein.
  
   
 0.700
Atu1020
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.696
Atu1021
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.696
motB-2
Flagellar motor protein.
   
   0.681
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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