Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
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[Homology]
Score
Atu1647ABC transporter, membrane spanning protein. (386 aa)    
Predicted Functional Partners:
Atu1645
ABC transporter, substrate binding protein.
 
 0.999
Atu1646
ABC transporter, nucleotide binding/ATPase protein.
 
 0.999
Atu1644
Conserved hypothetical protein.
 
  
 0.938
Atu0515
Conserved hypothetical protein.
  
 
 0.858
mobC
Mobilization protein C.
   
 
 0.696
Atu1648
Mandelate racemase/muconate lactonizing enzyme family protein.
       0.645
Atu0333
ABC transporter, nucleotide binding/ATPase protein.
 
  
  0.637
Atu1107
Conserved hypothetical protein.
  
 
 0.611
omp1
Group 1 outer membrane protein precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.603
Atu1108
Conserved hypothetical protein.
  
 
 0.601
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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