STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1647ABC transporter, membrane spanning protein. (386 aa)    
Predicted Functional Partners:
Atu1645
ABC transporter, substrate binding protein.
 
 0.999
Atu1646
ABC transporter, nucleotide binding/ATPase protein.
 
 0.999
Atu1644
Conserved hypothetical protein.
 
  
 0.932
Atu0515
Conserved hypothetical protein.
   
   0.895
mobC
Mobilization protein C.
   
   0.701
Atu0333
ABC transporter, nucleotide binding/ATPase protein.
 
  
  0.636
omp1
Group 1 outer membrane protein precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.605
Atu1648
Mandelate racemase/muconate lactonizing enzyme family protein.
       0.593
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
    
 0.544
Atu2615
Conserved hypothetical protein.
 
     0.540
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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