STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1713Conserved hypothetical protein; Belongs to the HesB/IscA family. (110 aa)    
Predicted Functional Partners:
gcvT
Glycine cleavage system T protein, aminomethyltransferase; Belongs to the GcvT family.
 
 
 0.823
nifU
NIFU-like protein.
  
 
 0.818
nifS-2
Cysteine desulfurase.
 
 
 0.816
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.784
Atu0351
Conserved hypothetical protein.
  
 
 0.717
djlA
Molecular chaperone, DnaJ family.
  
 
 0.685
sucA
Oxoglutarate dehydrogenase E1 component.
  
  
 0.666
grlA
Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.624
Atu1196
Naphthalene 1,2-dioxygenase.
  
 0.589
argS
arginyl-tRNA synthetase.
     
 0.551
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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