Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1720Conserved hypothetical protein. (333 aa)    
Predicted Functional Partners:
parB1
Chromosome Partitioning Protein; Belongs to the ParB family.
    
 
 0.797
Atu0499
Conserved hypothetical protein.
  
   
 0.777
Atu1710
Conserved hypothetical protein.
  
     0.741
Atu2449
Conserved hypothetical protein.
  
     0.738
Atu1348
Conserved hypothetical protein.
  
     0.737
Atu2446
Conserved hypothetical Protein.
  
     0.737
Atu1742
Conserved hypothetical protein.
  
     0.724
Atu1360
Conserved hypothetical protein.
  
     0.699
repB
Replication protein B; Belongs to the ParB family.
  
 
 
 0.686
Atu0788
Conserved hypothetical protein.
  
     0.682
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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