STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1775Polyketide biosynthesis associated protein. (222 aa)    
Predicted Functional Partners:
Atu1774
ABC transporter, substrate binding protein (peptide).
 
     0.709
Atu0276
Conserved hypothetical protein; Belongs to the ArsC family.
   
 
 0.694
arsC
Arsenate reductase.
   
 
 0.694
arsH
Arsenical resistance protein.
  
    0.508
Atu1776
Conserved hypothetical protein.
       0.483
Atu0250
Conserved hypothetical protein.
  
  
 0.478
Atu2380
Conserved hypothetical protein.
  
  
 0.478
Atu3538
Conserved hypothetical protein.
  
  
 0.475
Atu2362
S-methyltransferase.
   
    0.403
Atu1773
Conserved hypothetical protein.
       0.402
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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