Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu0080 | Atu1795 | Atu0080 | Atu1795 | Permease. | Malonate transporter. | 0.425 |
Atu0080 | Atu3356 | Atu0080 | Atu3356 | Permease. | NADP-dependent malic enzyme. | 0.756 |
Atu0080 | maeB | Atu0080 | Atu1652 | Permease. | NADP-dependent malic enzyme. | 0.756 |
Atu1366 | Atu1795 | Atu1366 | Atu1795 | Hypothetical protein. | Malonate transporter. | 0.553 |
Atu1366 | Atu3708 | Atu1366 | Atu3708 | Hypothetical protein. | Outer surface protein. | 0.715 |
Atu1366 | Atu8156 | Atu1366 | Atu8156 | Hypothetical protein. | Conserved hypothetical protein. | 0.953 |
Atu1795 | Atu0080 | Atu1795 | Atu0080 | Malonate transporter. | Permease. | 0.425 |
Atu1795 | Atu1366 | Atu1795 | Atu1366 | Malonate transporter. | Hypothetical protein. | 0.553 |
Atu1795 | Atu3356 | Atu1795 | Atu3356 | Malonate transporter. | NADP-dependent malic enzyme. | 0.756 |
Atu1795 | Atu3708 | Atu1795 | Atu3708 | Malonate transporter. | Outer surface protein. | 0.407 |
Atu1795 | Atu8156 | Atu1795 | Atu8156 | Malonate transporter. | Conserved hypothetical protein. | 0.479 |
Atu1795 | ccdA | Atu1795 | Atu1796 | Malonate transporter. | Cytochrome c-type biogenesis protein. | 0.732 |
Atu1795 | lldA | Atu1795 | Atu2318 | Malonate transporter. | L-lactate dehydrogenase. | 0.411 |
Atu1795 | maeB | Atu1795 | Atu1652 | Malonate transporter. | NADP-dependent malic enzyme. | 0.756 |
Atu1795 | mltB-2 | Atu1795 | Atu2122 | Malonate transporter. | Lytic murein transglycosylase. | 0.404 |
Atu3356 | Atu0080 | Atu3356 | Atu0080 | NADP-dependent malic enzyme. | Permease. | 0.756 |
Atu3356 | Atu1795 | Atu3356 | Atu1795 | NADP-dependent malic enzyme. | Malonate transporter. | 0.756 |
Atu3356 | lldA | Atu3356 | Atu2318 | NADP-dependent malic enzyme. | L-lactate dehydrogenase. | 0.940 |
Atu3356 | maeB | Atu3356 | Atu1652 | NADP-dependent malic enzyme. | NADP-dependent malic enzyme. | 0.949 |
Atu3708 | Atu1366 | Atu3708 | Atu1366 | Outer surface protein. | Hypothetical protein. | 0.715 |
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