STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1799Conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
Atu1800
Conserved hypothetical protein.
 
     0.720
Atu1710
Conserved hypothetical protein.
  
     0.538
Atu0480
Polysaccharide biosynthesis protein.
 
  
 0.530
Atu0257
Conserved hypothetical protein.
 
     0.519
exoH
Succinoglycan biosynthesis protein.
  
     0.509
Atu3549
Conserved hypothetical protein.
 
     0.497
Atu0568
Conserved hypothetical protein.
  
     0.482
Atu8021
Conserved hypothetical protein.
       0.470
Atu1351
Conserved hypothetical protein.
  
     0.463
Atu3424
Hypothetical protein.
  
     0.458
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.