STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1819Conserved hypothetical protein; Belongs to the HesB/IscA family. (129 aa)    
Predicted Functional Partners:
nifU
NIFU-like protein.
  
  
 0.947
nifS-2
Cysteine desulfurase.
 
  
 0.907
sufB
ABC transporter subunit.
  
 
 0.888
fdx
Ferrodoxin.
 
 
 0.817
sufC
ABC transporter, nucleotide binding/ATPase protein.
  
 
 0.817
sufD
Transport system.
  
 
 0.805
Atu0351
Conserved hypothetical protein.
 
 
 0.734
djlA
Molecular chaperone, DnaJ family.
  
 
 0.731
grlA
Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.716
nifS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.702
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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