Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sufCABC transporter, nucleotide binding/ATPase protein. (251 aa)    
Predicted Functional Partners:
sufD
Transport system.
 
 
 0.999
sufB
ABC transporter subunit.
 
 0.999
nifS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.997
Atu1820
Conserved hypothetical protein.
 
  
 0.971
nifU
NIFU-like protein.
 
  
 0.957
Atu0919
Conserved hypothetical protein.
 
 
 0.876
Atu1819
Conserved hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.847
nifS-2
Cysteine desulfurase.
  
  
 0.639
Atu1196
Naphthalene 1,2-dioxygenase.
     
 0.503
Atu1713
Conserved hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.503
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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