Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifS-2Cysteine desulfurase. (389 aa)    
Predicted Functional Partners:
nifU
NIFU-like protein.
  
 0.995
Atu3632
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.987
moeB
Molybdopterin biosynthesis protein.
 
 
 0.981
Atu1819
Conserved hypothetical protein; Belongs to the HesB/IscA family.
 
 
 0.945
Atu1215
Thiosulfate sulfurtransferase.
  
 0.930
fdx
Ferrodoxin.
 
 0.912
Atu3423
Conserved hypothetical protein.
 
  
 0.884
Atu0819
Conserved hypothetical protein.
 
  
 0.882
Atu0351
Conserved hypothetical protein.
 
 
 0.872
Atu1196
Naphthalene 1,2-dioxygenase.
  
 0.867
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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