Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1879ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family. (257 aa)    
Predicted Functional Partners:
Atu4234
ABC transporter, membrane spanning protein (amino acid).
 
   0.975
Atu4689
ABC transporter, membrane spanning protein (amino acid).
 
   0.969
Atu1397
ABC transporter, membrane spanning protein (amino acid).
 
   0.955
Atu4536
ABC transporter, membrane spanning protein (amino acid).
 
   0.949
Atu4753
ABC transporter, membrane spanning protein (amino acid).
 
 0.937
Atu4688
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.925
Atu1880
ABC transporter, membrane spanning protein (amino acid).
 
 0.924
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
 0.923
Atu1881
ABC transporter, membrane spanning protein (amino acid).
  
 0.918
Atu1398
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.913
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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