STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1879ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family. (257 aa)    
Predicted Functional Partners:
Atu4234
ABC transporter, membrane spanning protein (amino acid).
 
   0.976
Atu4689
ABC transporter, membrane spanning protein (amino acid).
 
   0.970
Atu1397
ABC transporter, membrane spanning protein (amino acid).
 
   0.957
Atu4536
ABC transporter, membrane spanning protein (amino acid).
 
   0.951
Atu4753
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.938
Atu1880
ABC transporter, membrane spanning protein (amino acid).
 
 0.927
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
 0.924
Atu4688
ABC transporter, membrane spanning protein (amino acid).
 
   0.924
Atu1881
ABC transporter, membrane spanning protein (amino acid).
  
 0.917
Atu1398
ABC transporter, membrane spanning protein (amino acid).
 
   0.912
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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