STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1905Short chain dehydrogenase. (261 aa)    
Predicted Functional Partners:
Atu4740
Zinc-binding dehydrogenase.
   
 
  0.901
Atu1904
Transcriptional regulator.
 
     0.760
Atu3051
Agropine synthesis reductase.
  
    0.726
tkt
Transketolase.
 
     0.599
glpK
Glycerol kinase 2.
   
 
 0.596
Atu2668
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.589
Atu1130
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.534
tktB
Transketolase.
 
     0.531
Atu4865
Oxidoreductase.
  
     0.524
Atu0864
Oxidoreductase.
  
     0.475
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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