STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1906ABC transporter, membrane spanning protein. (253 aa)    
Predicted Functional Partners:
Atu1907
ABC transporter, nucleotide binding/ATPase protein.
  
 0.980
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
  
 
 0.709
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
  
  
 0.593
Atu3570
Conserved hypothetical protein.
  
  
 0.546
Atu1908
Conserved hypothetical protein.
       0.535
Atu3638
Conserved hypothetical protein.
  
  
 0.502
lolD
ABC transporter, nucleotide binding/ATPase protein (lipoprotein); Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
    
 0.490
Atu1744
Nitroreductase family protein.
  
  
 0.472
Atu1647
ABC transporter, membrane spanning protein.
    
  0.450
Atu0013
NAD(P)H-flavin oxidoreductase.
  
  
 0.442
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.