Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu1978Conserved hypothetical protein. (272 aa)    
Predicted Functional Partners:
Atu1979
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.997
Atu1977
Amine oxidase, flavin-containing.
  
 0.985
cfa-2
Cyclopropane-fatty-acyl-phospholipid synthase.
 
  
 0.888
Atu1975
Conserved hypothetical protein.
 
     0.887
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.859
Atu1981
Conserved hypothetical protein.
 
     0.818
Atu1980
Conserved hypothetical protein.
       0.699
sigK
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.562
phrB
Conserved hypothetical protein; Photolyase involved in the repair of UV-induced (6-4) lesions in DNA. Catalyzes the photoreactivation of (6-4) pyrimidine-pyrimidone photoproducts by using blue-light energy. Can repair (6-4) photoproducts in ssDNA as well as in dsDNA. Belongs to the iron-sulfur bacterial cryptochrome/photolyase (FeS-BCP) family.
 
   
 0.543
Atu2090
ABC transporter, membrane spanning protein (sugar).
  
  
 0.524
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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