STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1978Conserved hypothetical protein. (272 aa)    
Predicted Functional Partners:
Atu1979
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.995
Atu1977
Amine oxidase, flavin-containing.
  
 0.976
Atu1975
Conserved hypothetical protein.
 
     0.891
cfa-2
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.886
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.856
Atu1981
Conserved hypothetical protein.
 
     0.811
Atu1980
Conserved hypothetical protein.
       0.698
sigK
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.563
phrB
Conserved hypothetical protein; Photolyase involved in the repair of UV-induced (6-4) lesions in DNA. Catalyzes the photoreactivation of (6-4) pyrimidine-pyrimidone photoproducts by using blue-light energy. Can repair (6-4) photoproducts in ssDNA as well as in dsDNA. Belongs to the iron-sulfur bacterial cryptochrome/photolyase (FeS-BCP) family.
 
   
 0.526
Atu2090
ABC transporter, membrane spanning protein (sugar).
  
  
 0.517
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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