STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1983Conserved hypothetical protein. (236 aa)    
Predicted Functional Partners:
sigK
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.951
Atu0475
Hypothetical protein.
  
     0.732
Atu0474
Putative RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.621
Atu1981
Conserved hypothetical protein.
 
     0.562
Atu0472
Conserved hypothetical protein.
 
   
 0.539
Atu1977
Amine oxidase, flavin-containing.
     
 0.428
Atu1980
Conserved hypothetical protein.
       0.421
Atu1978
Conserved hypothetical protein.
       0.412
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.