STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1987Two component response regulator. (124 aa)    
Predicted Functional Partners:
Atu1038
Two component response regulator.
  
     0.772
Atu4164
Two component sensor kinase.
 
     0.734
Atu1988
Two component sensor kinase.
 
   
 0.729
Atu4163
Two component sensor kinase.
 
     0.717
Atu4162
Two component response regulator.
  
   
 0.695
fsrR
Two component sensor kinase.
 
   
 0.687
Atu1986
Two component sensor kinase.
 
   
 0.649
Atu1985
Two component response regulator.
 
   
 0.554
Atu4047
Two component sensor kinase/response regulator hybrid.
 
   
 0.549
Atu4671
Two component response regulator.
  
     0.532
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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