STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1990Bacteriophytochrome protein. (736 aa)    
Predicted Functional Partners:
Atu1989
Two component response regulator.
 
 
 
 0.973
Atu1988
Two component sensor kinase.
   
 0.927
Atu4047
Two component sensor kinase/response regulator hybrid.
 
 
 
 0.732
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
 
 0.594
Atu2332
Two component sensor kinase/response regulator hybrid.
 
 
 
0.562
Atu1985
Two component response regulator.
 
 
 
 0.558
Atu8024
Hypothetical protein.
       0.532
Atu0527
Two component sensor kinase/response regulator hybrid.
   
 
 0.499
Atu1362
Two component sensor kinase.
   
 
 0.495
Atu1553
Conserved hypothetical protein.
 
   
 0.494
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.