STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2012ABC transporter, nucleotide binding/ATPase protein. (342 aa)    
Predicted Functional Partners:
Atu2013
ABC transporter, membrane spanning protein.
 
  
  0.978
Atu4579
ABC transporter, membrane spanning protein.
 
  
  0.871
Atu2014
ABC transporter, substrate binding protein.
 
    0.861
Atu0613
ABC transporter, membrane spanning protein.
 
  
  0.830
fbpA3
ABC transporter, membrane spanning protein.
 
  
  0.824
afuB
ABC transporter, membrane spanning protein (iron).
    
  0.800
Atu4570
ABC transporter, membrane spanning protein.
 
     0.595
Atu4571
ABC transporter, membrane spanning protein.
 
     0.586
Atu4208
ABC transporter, substrate binding protein (sugar).
  
 
 0.575
ugpE
ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 
  0.547
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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