STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2013ABC transporter, membrane spanning protein. (564 aa)    
Predicted Functional Partners:
Atu2012
ABC transporter, nucleotide binding/ATPase protein.
 
  
  0.978
Atu2014
ABC transporter, substrate binding protein.
 
  
 0.970
fbpA1
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 
 0.868
afuC
ABC transporter, nucleotide binding/ATPase protein (iron); Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.864
Atu4578
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 
 0.861
Atu4577
ABC transporter, substrate binding protein.
 
  
 0.812
afuA
ABC transporter, substrate binding protein (iron).
 
  
 0.739
afuA-2
ABC transporter, substrate binding protein (iron).
 
  
 0.679
Atu2011
Conserved hypothetical protein.
       0.494
thiB
ABC transporter, substrate binding protein (thiamine).
 
  
 0.488
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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