Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2031Conserved hypothetical protein. (262 aa)    
Predicted Functional Partners:
Atu2029
Conserved hypothetical protein.
 
     0.956
Atu2030
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.937
Atu1486
Conserved hypothetical protein.
 
     0.690
prtI
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.604
Atu2028
Transcriptional regulator, ArsR family.
       0.557
Atu8169
Conserved hypothetical protein.
       0.557
Atu2032
Aldo/keto reductase.
 
    0.519
Atu2432
Hypothetical protein.
  
     0.503
Atu4160
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.495
Atu4162
Two component response regulator.
  
 
 0.491
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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