STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2032Aldo/keto reductase. (281 aa)    
Predicted Functional Partners:
Atu2031
Conserved hypothetical protein.
 
    0.519
Atu2030
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.461
Atu4868
Putative oxidoreductase.
 
 
0.459
Atu2029
Conserved hypothetical protein.
       0.455
Atu4876
Putative oxidoreductase.
 
 
0.454
Atu0263
Oxidoreductase.
 
 
0.451
Atu3438
Putative oxidoreductase.
 
 
0.450
Atu4590
Putative oxidoreductase.
 
 
0.438
Atu1093
Aldo/keto reductase.
 
 
0.433
Atu3809
Oxidoreductase.
 
 
0.432
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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