Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu2078Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
Atu2077
DNA polymerase III, epsilon subunit.
       0.713
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.634
Atu1765
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.615
Atu3355
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.612
Atu2079
ABC transporter, membrane spanning protein.
 
    0.594
Atu4021
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.588
Atu3808
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.579
Atu3829
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.578
Atu4004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.576
Atu1209
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.570
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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