STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiBL-carnitine dehydratase; Belongs to the CoA-transferase III family. (400 aa)    
Predicted Functional Partners:
iivG
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
 
 0.872
gcdH
glutaryl-CoA dehydrogenase.
 
 0.759
acd-7
acyl-CoA dehydrogenase.
 
 0.726
Atu2126
Conserved hypothetical protein.
       0.601
Atu4822
Fatty acid CoA ligase.
    
 0.549
fadB-2
enoyl-CoA hydratase.
  
 
 0.548
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.548
citE
Citrate lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.535
mutA
methylmalonyl-CoA mutase.
     
 0.532
Atu2129
Conserved hypothetical protein.
       0.487
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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