STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2149ABC transporter, membrane spanning protein. (260 aa)    
Predicted Functional Partners:
Atu2150
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 
 0.983
Atu2148
ABC transporter, membrane spanning protein.
 
  
 0.974
Atu2147
ABC transporter, substrate binding protein.
 
   
 0.924
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
 
 
 0.764
adh-2
Alcohol dehydrogenase.
     
 0.756
Atu4422
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
 
 0.714
potF
ABC transporter, substrate binding protein (putrescine); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
 
 0.687
Atu3088
ABC transporter, substrate binding protein (spermidine/putrescine).
  
 
 0.687
potB
ABC transporter, membrane spanning protein.
  
 
 0.636
Atu3087
ABC transporter, membrane spanning protein (spermidine/putrescine).
  
 
 0.636
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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