Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu2150ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily. (352 aa)    
Predicted Functional Partners:
Atu2149
ABC transporter, membrane spanning protein.
 
 
 0.983
Atu2148
ABC transporter, membrane spanning protein.
 
  
 0.967
Atu2147
ABC transporter, substrate binding protein.
 
  
 0.906
Atu4571
ABC transporter, membrane spanning protein.
 
 
 0.784
Atu4570
ABC transporter, membrane spanning protein.
 
 
 0.782
Atu4423
ABC transporter, membrane spanning protein.
 
 
 0.765
Atu4422
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
 
 0.755
adh-2
Alcohol dehydrogenase.
       0.735
Atu4244
ABC transporter, membrane spanning protein (polyamine).
 
 
 0.702
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
 
 0.684
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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