STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adh-2Alcohol dehydrogenase. (347 aa)    
Predicted Functional Partners:
adhC
Alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
0.928
adhP
Alcohol dehydrogenase.
  
  
 
0.913
aldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.912
Atu3401
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.912
Atu3950
Aldehyde dehydrogenase.
  
 0.912
Atu4849
NADP-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.912
Atu2149
ABC transporter, membrane spanning protein.
     
 0.756
Atu2148
ABC transporter, membrane spanning protein.
       0.737
Atu2150
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
       0.735
Atu1136
Reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.474
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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