Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu2242ABC transporter, nucleotide binding/ATPase protein. (616 aa)    
Predicted Functional Partners:
Atu2241
ABC transporter, nucleotide binding/ATPase protein.
 
  
 
0.969
Atu0748
Deacetylase.
  
 0.503
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
   
 
 0.469
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
  
 0.459
Atu4261
ABC transporter, nucleotide binding/ATPase protein.
 
     
0.436
Atu1064
ABC transporter, nucleotide binding/ATPase protein.
  
 
0.435
Atu2454
Iron-chelator utilization protein.
  
 
 0.422
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.408
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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