STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2252Conserved hypothetical protein. (209 aa)    
Predicted Functional Partners:
papS
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.804
Atu2251
NTP pyrophosphohydrolase, MutT family.
       0.804
Atu8175
Putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif).
 
     0.700
Atu2257
Conserved hypothetical protein.
 
     0.686
Atu2254
Conserved hypothetical protein.
 
     0.635
moxR
MoxR family protein.
 
     0.628
Atu0536
Conserved hypothetical protein; Belongs to the UPF0262 family.
  
     0.474
acd
acyl-CoA dehydrogenase.
  
     0.447
Atu1301
Conserved hypothetical protein.
 
     0.435
Atu0527
Two component sensor kinase/response regulator hybrid.
  
     0.411
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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