Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2254Conserved hypothetical protein. (304 aa)    
Predicted Functional Partners:
moxR
MoxR family protein.
  
 0.987
Atu8175
Putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif).
 
    0.974
Atu2257
Conserved hypothetical protein.
 
     0.972
Atu3602
Conserved hypothetical protein.
  
   
 0.780
Atu1373
Conserved hypothetical protein.
  
     0.710
Atu2252
Conserved hypothetical protein.
 
     0.668
papS
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.634
Atu0361
Transcriptional regulator.
  
     0.617
Atu2251
NTP pyrophosphohydrolase, MutT family.
       0.561
Atu3757
Conserved hypothetical protein.
 
  
 0.554
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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