STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyaCAdenylate cyclase protein. (391 aa)    
Predicted Functional Partners:
Atu8180
Conserved hypothetical protein.
  
     0.724
Atu2584
Conserved hypothetical protein.
  
     0.721
cyaA-2
Putative adenylate cyclase.
  
     0.700
cyaA
Adenylate cyclase.
  
     0.693
Atu2587
ABC transporter, substrate binding protein (oligopeptide).
  
     0.678
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
  
     0.673
Atu2590
Conserved hypothetical protein.
  
     0.643
redA
Conserved hypothetical protein.
  
     0.593
redB
Glucosyltransferase.
  
     0.574
Atu2589
ABC transporter, membrane spanning protein (oligopeptide).
  
     0.552
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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