STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2281ABC transporter, substrate binding protein (proline/glycine betaine). (317 aa)    
Predicted Functional Partners:
Atu2279
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
 
 0.967
Atu2280
ABC transporter, membrane spanning protein (proline/glycine betaine).
  
 0.930
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
  
  
 
0.928
Atu2060
ABC transporter, substrate binding protein (glycine betaine).
  
  
 
0.905
Atu4647
Conserved hypothetical protein.
  
  
 
0.904
Atu0895
ABC transporter, substrate binding protein.
     
  0.900
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
     
  0.900
Atu4046
ABC transporter, substrate binding protein (glycine betaine).
     
  0.900
betI
Transcriptional regulator BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
 
     0.729
Atu3954
ABC transporter, membrane spanning protein.
  
 0.727
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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