STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2287Outer membrane heme receptor. (746 aa)    
Predicted Functional Partners:
tonB
tonB protein.
 
 
 0.794
tolA
Conserved hypothetical protein.
  
 
 0.735
Atu0570
Chemotaxis protein.
  
 
 
 0.734
Atu0409
Ferrichrome iron receptor.
  
  
 0.717
Atu4562
Hypothetical protein.
    
 
 0.694
cscA
Sucrose hydrolase.
    
   0.666
hasR
Heme receptor.
 
  
 0.646
fhuA
Hydroxamate-type ferrisiderophore receptor.
 
  
 0.623
hmuT
ABC transporter, substrate binding protein (hemin).
 
  
 0.577
Atu2129
Conserved hypothetical protein.
  
  
 0.569
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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