STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2312Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
Atu3951
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.706
oxyR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.697
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.691
Atu4411
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.687
Atu1209
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.686
Atu1765
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.680
nac
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.653
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.620
Atu4004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.585
Atu3829
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.577
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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