STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynAEndo-1,4-beta-xylanase. (355 aa)    
Predicted Functional Partners:
Atu2370
Hypothetical protein.
       0.804
arfA
alpha-L-arabinofuranosidase.
 
   
 0.689
exoM
UDP-hexose transferase.
 
     0.662
picA
Polygalacturonase-like protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.621
Atu3108
Conserved hypothetical protein.
  
     0.601
exsH
Endo-1,3-1,4-beta-glycanase.
 
   
 0.565
Atu4560
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.561
Atu2409
Conserved hypothetical protein.
 
 
 
 0.530
exoU
UDP-hexose transferase.
       0.518
Atu3285
Glycosidase; Belongs to the glycosyl hydrolase 31 family.
  
   
 0.461
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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