STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoMUDP-hexose transferase. (314 aa)    
Predicted Functional Partners:
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.835
exoQ
Exopolysaccharide production protein.
 
  
 0.807
exoQ-2
Exopolysaccharide production protein.
 
  
 0.807
exoU
UDP-hexose transferase.
  
  
 0.780
exoQ-3
Exopolysaccharide production protein.
 
  
 0.735
xynA
Endo-1,4-beta-xylanase.
 
     0.662
exoL
Succinoglycan biosynthesis protein.
 
  
 0.651
exoF
Exopolysaccharide production protein.
 
  
 0.597
manC
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.590
exoP-2
Exopolysaccharide polymerization/transport protein.
 
  
 0.533
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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