STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2384Transcriptional regulator, TetR family. (213 aa)    
Predicted Functional Partners:
Atu2388
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
     0.699
dht
Dihydropyrimidinase.
 
     0.690
amaB
N-carbamoyl-beta-alanine amidohydrolase.
 
     0.689
Atu2391
ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate).
 
     0.664
Atu2389
ABC transporter, membrane spanning protein.
 
     0.603
Atu2390
ABC transporter, membrane spanning protein.
 
     0.596
betI
Transcriptional regulator BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
  
   
 0.571
Atu2383
Conserved hypothetical protein.
       0.516
Atu0036
Conserved hypothetical protein.
  
   
 0.513
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
    
 
 0.482
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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